Caenorhabditis elegans
- Tandem Repeat Analysis
Protocol
Experimental procedure
The file c_elegans.fasta corresponds to the frozen data (April 11, 2005
ftp://ftp.wormbase.org/pub/wormbase/data_freezes/WS140/acedb/CHROMOSOMES/
) of
Caenorhabditis elegans
genome.
Genome sequence FASTA file
Genome complexity - 100,291,840 bp
The file was submitted to Tandem Repeats Finder (TRF) (
Benson, 1999
) program using the following parameters:
2 5 7 80 10 25 1000.
TRF output files were analyzed by the Tandem Repeat Analysis Program (TRAP) using the following parameters:
Minimum period size of repeats - 1
Maximum period size of repeats - 6
Minimum identity percentage - 100
Create HTML - yes
Sorting - according to the total number of bases